Merge branch 'vsbuffalo-master' into develop

[samtools.git] / examples / toy.sam

diff --git a/examples/toy.sam b/examples/toy.sam
index eae1e2d93d113d9b19b17236fb5386161e373fcd..33449b176bc030a032c261c5280a907cebd8e58a 100644 (file)
--- a/examples/toy.sam
+++ b/examples/toy.sam
@@ -1,14 +1,14 @@
 @SQ    SN:ref  LN:45
 @SQ    SN:ref2 LN:40
-r001   163     ref     7       30      8M2I4M1D3M      =       37      39      TTAGATAAAGGATACTG       *
-r002   0       ref     9       30      1S2I6M1P1I4M2I  *       0       0       AAAAGATAAGGATAAA        *
+r001   163     ref     7       30      8M4I4M1D3M      =       37      39      TTAGATAAAGAGGATACTG     *       XX:B:S,12561,2,20,112
+r002   0       ref     9       30      1S2I6M1P1I1P1I4M2I      *       0       0       AAAAGATAAGGGATAAA       *
 r003   0       ref     9       30      5H6M    *       0       0       AGCTAA  *
 r004   0       ref     16      30      6M14N1I5M       *       0       0       ATAGCTCTCAGC    *
 r003   16      ref     29      30      6H5M    *       0       0       TAGGC   *
 r001   83      ref     37      30      9M      =       7       -39     CAGCGCCAT       *
-x1     0       ref2    1       30      20M     *       0       0       aggttttataaaacaaataa    ::::::::::::::::::::
-x2     0       ref2    2       30      21M     *       0       0       ggttttataaaacaaataatt   :::::::::::::::::::::
-x3     0       ref2    6       30      9M4I13M *       0       0       ttataaaacAAATaattaagtctaca      ::::::::::::::::::::::::::
-x4     0       ref2    10      30      25M     *       0       0       CaaaTaattaagtctacagagcaac       :::::::::::::::::::::::::
-x5     0       ref2    12      30      24M     *       0       0       aaTaattaagtctacagagcaact        ::::::::::::::::::::::::
-x6     0       ref2    14      30      23M     *       0       0       Taattaagtctacagagcaacta :::::::::::::::::::::::
+x1     0       ref2    1       30      20M     *       0       0       aggttttataaaacaaataa    ????????????????????
+x2     0       ref2    2       30      21M     *       0       0       ggttttataaaacaaataatt   ?????????????????????
+x3     0       ref2    6       30      9M4I13M *       0       0       ttataaaacAAATaattaagtctaca      ??????????????????????????
+x4     0       ref2    10      30      25M     *       0       0       CaaaTaattaagtctacagagcaac       ?????????????????????????
+x5     0       ref2    12      30      24M     *       0       0       aaTaattaagtctacagagcaact        ????????????????????????
+x6     0       ref2    14      30      23M     *       0       0       Taattaagtctacagagcaacta ???????????????????????