added an example of calculating read depth

[samtools.git] / examples / Makefile

diff --git a/examples/Makefile b/examples/Makefile
index b6908faff0312ddf51e6a413ca03ad74508bcead..3fe3e5a63a8643c49e8bf75447d4a55fac847add 100644 (file)
--- a/examples/Makefile
+++ b/examples/Makefile
@@ -1,4 +1,4 @@
-all:../samtools ex1.glf ex1.pileup.gz ex1.bam.bai ex1.glfview.gz
+all:../libbam.a ../samtools ex1.glf ex1.pileup.gz ex1.bam.bai ex1.glfview.gz calDepth
                @echo; echo \# You can now launch the viewer with: \'samtools tview ex1.bam ex1.fa\'; echo;
 
 ex1.fa.fai:ex1.fa
@@ -17,5 +17,11 @@ ex1.glfview.gz:ex1.glf
 ../samtools:
                (cd ..; make samtools)
 
+../libbam.a:
+               (cd ..; make libbam.a)
+
+calDepth:../libbam.a calDepth.c
+               gcc -g -Wall -O2 -I.. calDepth.c -o $@ -lm -lz -L.. -lbam
+
 clean:
-               rm -f *.bam *.bai *.glf* *.fai *.pileup* *~
\ No newline at end of file
+               rm -fr *.bam *.bai *.glf* *.fai *.pileup* *~ calDepth *.dSYM
\ No newline at end of file