-all:../samtools ex1.glf ex1.pileup.gz ex1.bam.bai ex1.glfview.gz
+all:../libbam.a ../samtools ex1.glf ex1.pileup.gz ex1.bam.bai ex1.glfview.gz calDepth
@echo; echo \# You can now launch the viewer with: \'samtools tview ex1.bam ex1.fa\'; echo;
ex1.fa.fai:ex1.fa
../samtools:
(cd ..; make samtools)
+../libbam.a:
+ (cd ..; make libbam.a)
+
+calDepth:../libbam.a calDepth.c
+ gcc -g -Wall -O2 -I.. calDepth.c -o $@ -lm -lz -L.. -lbam
+
clean:
- rm -f *.bam *.bai *.glf* *.fai *.pileup* *~
\ No newline at end of file
+ rm -fr *.bam *.bai *.glf* *.fai *.pileup* *~ calDepth *.dSYM
\ No newline at end of file