class DistanceCommand : public Command {
public:
- DistanceCommand(string);
+ DistanceCommand(string);
~DistanceCommand();
int execute();
void help();
//void appendFiles(string, string);
void createProcesses(string);
int driver(/*Dist*, SequenceDB, */int, int, string, float);
- void convertMatrix(string);
+
+ #ifdef USE_MPI
+ int driverMPI(int, int, MPI_File&, float);
+ int driverMPI(int, int, string, long&);
+ #endif
+
+ int convertMatrix(string);
+ int convertToLowerTriangle(string);
};