class DeconvoluteCommand : public Command {
public:
- DeconvoluteCommand(string);
- ~DeconvoluteCommand() { delete fastamap; };
+ DeconvoluteCommand(string);
+ ~DeconvoluteCommand() { };
int execute();
void help();
private:
- FastaMap* fastamap;
- ifstream in;
- ofstream out, outFasta;
- string filename, outputFileName, outFastafile;
+ string inFastaName, oldNameMapFName, outputDir;
bool abort;
};