}
oldNameMapFName = validParameter.validFile(parameters, "name", true);
- if (oldNameMapFName == "not open") { abort = true; }
+ if (oldNameMapFName == "not open") { oldNameMapFName = ""; abort = true; }
else if (oldNameMapFName == "not found"){ oldNameMapFName = ""; }
else { m->setNameFile(oldNameMapFName); }
+
+ if (oldNameMapFName == "") {
+ vector<string> files; files.push_back(inFastaName);
+ parser.getNameFile(files);
+ }
+
}
}