various changes for ape 2.3

[ape.git] / data / bird.orders.R

diff --git a/data/bird.orders.R b/data/bird.orders.R
index 73740d997b6c8505f543150721415eb66b0e888a..f1640e1fb2183e0cbdb31b2168f675036d5a0448 100644 (file)
--- a/data/bird.orders.R
+++ b/data/bird.orders.R
@@ -1,19 +1,2 @@
-"bird.orders" <-
-structure(list(edge = structure(c(24, 25, 26, 26, 25, 27, 28,
-28, 27, 24, 29, 29, 30, 30, 31, 32, 32, 33, 34, 34, 33, 35, 35,
-31, 36, 36, 37, 37, 38, 38, 39, 40, 41, 41, 40, 42, 42, 39, 43,
-44, 44, 45, 45, 43, 25, 26, 1, 2, 27, 28, 3, 4, 5, 29, 6, 30,
-7, 31, 32, 8, 33, 34, 9, 10, 35, 11, 12, 36, 13, 37, 14, 38,
-15, 39, 40, 41, 16, 17, 42, 18, 19, 43, 44, 20, 45, 21, 22, 23
-), .Dim = c(44, 2)), edge.length = c(2.1, 4.1, 21.8, 21.8, 3,
-1.3, 21.6, 21.6, 22.9, 1, 27, 0.7, 26.3, 1.3, 0.6, 24.4, 1, 2.6,
-20.8, 20.8, 1.3, 22.1, 22.1, 0.5, 24.5, 0.8, 23.7, 0.6, 23.1,
-0.6, 0.6, 0.6, 21.3, 21.3, 1.5, 20.4, 20.4, 0.9, 0.8, 20.8, 0.7,
-20.1, 20.1, 21.6), tip.label = c("Struthioniformes", "Tinamiformes",
-"Craciformes", "Galliformes", "Anseriformes", "Turniciformes",
-"Piciformes", "Galbuliformes", "Bucerotiformes", "Upupiformes",
-"Trogoniformes", "Coraciiformes", "Coliiformes", "Cuculiformes",
-"Psittaciformes", "Apodiformes", "Trochiliformes", "Musophagiformes",
-"Strigiformes", "Columbiformes", "Gruiformes", "Ciconiiformes",
-"Passeriformes"), Nnode = 22), .Names = c("edge", "edge.length",
-"tip.label", "Nnode"), class = "phylo")
+require(ape, quietly = TRUE, save = FALSE)
+bird.orders <- read.tree("bird.orders.tre")