#ifndef COMMANDOPTIONPARSER_HPP
#define COMMANDOPTIONPARSER_HPP
+#include "mothur.h"
+#include "mothurout.h"
+
//**********************************************************************************************************************
class CommandOptionParser {
public:
CommandOptionParser(string);
string getCommandString();
+ string getOptionString();
private:
- string commandString;
+ string commandString, optionString;
+ MothurOut* m;
};
//**********************************************************************************************************************