#include "validcalculator.h"
#include "sharedutilities.h"
-/* The collect.shared() command:
- The collect command generates a collector's curve from the given file representing several groups.
- The collect.shared command can only be executed after a successful read.shared command.
- It outputs a file for each estimator you choose to use. The collect.shared command parameters are label, line, freq, jumble and shared.
- No parameters are required, but you may not use both the line and label parameters at the same time.
- The collect.shared command should be in the following format: collect.shared(label=yourLabel, line=yourLines,
- freq=yourFreq, jumble=yourJumble, shared=yourEstimators). Example collect.shared(label=unique-.01-.03, line=0,5,10, freq=10, jumble=1,
- shared=sharedChao-sharedAce-sharedJabund). The default values for jumble is 0 (meaning don’t jumble, if it’s set to 1 then it will jumble),
- freq is 100 and shared are sharedChao-sharedAce-sharedJabund-sharedSorensonAbund-sharedJclass-sharedSorClass-sharedJest-sharedSorEst-SharedThetaYC-SharedThetaN.
- The valid shared estimators are: sharedChao-sharedAce-sharedJabund-sharedSorensonAbund-sharedJclass-sharedSorClass-sharedJest-sharedSorEst-SharedThetaYC-SharedThetaN.
- The label and line parameters are used to analyze specific lines in your input. */
-
-
class GlobalData;
class CollectSharedCommand : public Command {
public:
+ CollectSharedCommand(string);
CollectSharedCommand();
~CollectSharedCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
+ void help();
private:
GlobalData* globaldata;
ValidCalculators* validCalculator;
Collect* cCurve;
vector<Display*> cDisplays;
- int freq;
+ float freq;
string format;
+ bool abort, allLines, all;
+ set<string> labels; //holds labels to be used
+ string label, calc, groups, outputDir;
+ vector<string> Estimators, Groups, outputNames;
+ map<string, vector<string> > outputTypes;
+
+
};
#endif