#include "groupmap.h"
#include "collect.h"
#include "display.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
#include "validcalculator.h"
/*The collect() command:
class CollectCommand : public Command {
public:
- CollectCommand();
+ CollectCommand(string);
~CollectCommand();
int execute();
+ void help();
private:
GlobalData* globaldata;
- ReadMatrix* read;
+ ReadOTUFile* read;
OrderVector* order;
InputData* input;
Collect* cCurve;
ValidCalculators* validCalculator;
vector<Display*> cDisplays;
- int freq, abund;
+ int freq, abund, size;
+
+ bool abort, allLines;
+ set<int> lines; //hold lines to be used
+ set<string> labels; //holds labels to be used
+ string line, label, calc;
+ vector<string> Estimators;
+
};