worked on unit tests for sam.rb

[biopieces.git] / code_ruby / test / maasha / test_sam.rb

diff --git a/code_ruby/test/maasha/test_sam.rb b/code_ruby/test/maasha/test_sam.rb
index cb24b467db6971d6fc3cbcd01e40d80a33590057..c18958522cb0be1b14342b317eff53dc3e9c3a26 100755 (executable)
--- a/code_ruby/test/maasha/test_sam.rb
+++ b/code_ruby/test/maasha/test_sam.rb
@@ -359,6 +359,29 @@ class SamTest < Test::Unit::TestCase
     assert_nothing_raised { sam.each }
   end
 
+  def test_Sam_each_with_bad_cigar_hard_clip_raises
+    sam = Sam.new(StringIO.new("*\t*\t*\t*\t*\t1M1H1M\t*\t*\t\*\tAAA\t*\n"))
+    assert_raise(SamError) { sam.each }
+
+    sam = Sam.new(StringIO.new("*\t*\t*\t*\t*\t1H1M1H1M\t*\t*\t\*\tAAA\t*\n"))
+    assert_raise(SamError) { sam.each }
+
+    sam = Sam.new(StringIO.new("*\t*\t*\t*\t*\t1M1H1M1H\t*\t*\t\*\tAAA\t*\n"))
+    assert_raise(SamError) { sam.each }
+  end
+
+  def test_Sam_each_with_ok_cigar_hard_clip_dont_raise
+    sam = Sam.new(StringIO.new("*\t*\t*\t*\t*\t1H1M\t*\t*\t\*\tA\t*\n"))
+    assert_nothing_raised { sam.each }
+
+    sam = Sam.new(StringIO.new("*\t*\t*\t*\t*\t1M1H\t*\t*\t\*\tA\t*\n"))
+    assert_nothing_raised { sam.each }
+
+    sam = Sam.new(StringIO.new("*\t*\t*\t*\t*\t1H1M1H\t*\t*\t\*\tA\t*\n"))
+    assert_nothing_raised { sam.each }
+    #assert_raise(SamError) { sam.each }
+  end
+
   def test_Sam_each_with_bad_cigar_length_raise
     sam = Sam.new(StringIO.new("*\t*\t*\t*\t*\t6M\t*\t*\t\*\tAAAAA\t*\n"))
     assert_raise(SamError) { sam.each }