class FastaTest < Test::Unit::TestCase
def test_Fasta_get_entry_obtains_the_correct_seq_name
fasta = Fasta.new(StringIO.new(">test\nATCG\n"))
- assert_equal(fasta.get_entry.seq_name, "test")
+ assert_equal("test", fasta.get_entry.seq_name)
end
def test_Fasta_get_entry_obtains_the_correct_seq_without_trailing_newlines
fasta = Fasta.new(StringIO.new(">test\nATCG"))
- assert_equal(fasta.get_entry.seq, "ATCG")
+ assert_equal("ATCG", fasta.get_entry.seq)
end
def test_Fasta_get_entry_obtains_the_correct_seq_with_trailing_newlines
fasta = Fasta.new(StringIO.new(">test\nATCG\n\n\n"))
- assert_equal(fasta.get_entry.seq, "ATCG")
+ assert_equal("ATCG", fasta.get_entry.seq)
end
def test_Fasta_get_entry_obtains_the_correct_type
fasta = Fasta.new(StringIO.new(">test\nATCG\n"), 'DNA')
- assert_equal(fasta.get_entry.type, "dna")
+ assert_equal("dna", fasta.get_entry.type)
end
def test_Fasta_get_entry_rstrips_whitespace_from_seq_name
fasta = Fasta.new(StringIO.new(">test\n\r\t ATCG\n"))
- assert_equal(fasta.get_entry.seq_name, "test")
+ assert_equal("test", fasta.get_entry.seq_name)
end
def test_Fasta_get_entry_strips_whitespace_from_seq
fasta = Fasta.new(StringIO.new(">test\n\r\t AT\n\r\t CG\n\r\t "))
- assert_equal(fasta.get_entry.seq, "ATCG")
+ assert_equal("ATCG", fasta.get_entry.seq)
end
def test_Fasta_get_entry_with_two_entries_obtain_correct
fasta = Fasta.new(StringIO.new(">test1\n\r\t AT\n\r\t CG\n\r\t \n>test2\n\r\t atcg\n"))
- assert_equal(fasta.get_entry.seq, "ATCG")
- assert_equal(fasta.get_entry.seq, "atcg")
+ assert_equal("ATCG", fasta.get_entry.seq)
+ assert_equal("atcg", fasta.get_entry.seq)
end
def test_Fasta_get_entry_without_seq_name_raises
fasta = Fasta.new(StringIO.new("ATCG\n"))
- assert_raise( FastaError ) { fasta.get_entry }
+ assert_raise(FastaError) { fasta.get_entry }
end
def test_Fasta_get_entry_without_seq_raises
fasta = Fasta.new(StringIO.new(">test\n\n"))
- assert_raise( FastaError ) { fasta.get_entry }
+ assert_raise(FastaError) { fasta.get_entry }
end
def test_Fasta_get_entry_with_leading_newline_raises
fasta = Fasta.new(StringIO.new("\n>test\nATCG\n"))
- assert_raise( FastaError ) { fasta.get_entry }
+ assert_raise(FastaError) { fasta.get_entry }
end
# FIXME