fixed unit tests for test_trim.rb

[biopieces.git] / code_ruby / test / maasha / seq / test_trim.rb

diff --git a/code_ruby/test/maasha/seq/test_trim.rb b/code_ruby/test/maasha/seq/test_trim.rb
index 7c491bb5ba5ddce4a084d1771881446fa3da38cd..9c3f7d076ff4246f9383250879e74e33e0ea5238 100755 (executable)
--- a/code_ruby/test/maasha/seq/test_trim.rb
+++ b/code_ruby/test/maasha/seq/test_trim.rb
@@ -61,8 +61,8 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "AAAAATCG"
     @entry.qual = "hhhhhgfe"
     new_entry = @entry.quality_trim_right(38)
-    assert_equal("AAAAAT", new_entry.seq) 
-    assert_equal("hhhhhg", new_entry.qual) 
+    assert_equal("AAAAATC", new_entry.seq) 
+    assert_equal("hhhhhgf", new_entry.qual) 
     assert_equal("AAAAATCG", @entry.seq) 
     assert_equal("hhhhhgfe", @entry.qual) 
   end
@@ -71,8 +71,8 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "AAAAATCG"
     @entry.qual = "hhhhhgfe"
     @entry.quality_trim_right!(38)
-    assert_equal("AAAAAT", @entry.seq) 
-    assert_equal("hhhhhg", @entry.qual) 
+    assert_equal("AAAAATC", @entry.seq) 
+    assert_equal("hhhhhgf", @entry.qual) 
   end
 
   def test_Trim_quality_trim_right_with_all_low_qual_returns_correctly
@@ -87,8 +87,8 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "GCTAAAAA"
     @entry.qual = "efghhhhh"
     new_entry = @entry.quality_trim_left(38)
-    assert_equal("TAAAAA", new_entry.seq) 
-    assert_equal("ghhhhh", new_entry.qual) 
+    assert_equal("CTAAAAA", new_entry.seq) 
+    assert_equal("fghhhhh", new_entry.qual) 
     assert_equal("GCTAAAAA", @entry.seq) 
     assert_equal("efghhhhh", @entry.qual) 
   end
@@ -97,8 +97,8 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "GCTAAAAA"
     @entry.qual = "efghhhhh"
     @entry.quality_trim_left!(38)
-    assert_equal("TAAAAA", @entry.seq) 
-    assert_equal("ghhhhh", @entry.qual) 
+    assert_equal("CTAAAAA", @entry.seq) 
+    assert_equal("fghhhhh", @entry.qual) 
   end
 
   def test_Trim_quality_trim_left_with_all_low_qual_returns_correctly
@@ -113,8 +113,8 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "GCTAAAAAGTG"
     @entry.qual = "efghhhhhgfe"
     new_entry = @entry.quality_trim(38)
-    assert_equal("TAAAAAG", new_entry.seq) 
-    assert_equal("ghhhhhg", new_entry.qual) 
+    assert_equal("CTAAAAAGT", new_entry.seq) 
+    assert_equal("fghhhhhgf", new_entry.qual) 
     assert_equal("GCTAAAAAGTG", @entry.seq) 
     assert_equal("efghhhhhgfe", @entry.qual) 
   end
@@ -123,16 +123,16 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "GCTAAAAAGTG"
     @entry.qual = "efghhhhhgfe"
     @entry.quality_trim!(38)
-    assert_equal("TAAAAAG", @entry.seq) 
-    assert_equal("ghhhhhg", @entry.qual) 
+    assert_equal("CTAAAAAGT", @entry.seq) 
+    assert_equal("fghhhhhgf", @entry.qual) 
   end
 
   def test_Trim_quality_trim_with_min_len_bang_returns_correctly
     @entry.seq  = "GCTCAAACGTG"
     @entry.qual = "hdefghgfedh"
     @entry.quality_trim!(37, 2)
-    assert_equal("CAAAC", @entry.seq) 
-    assert_equal("fghgf", @entry.qual) 
+    assert_equal("TCAAACG", @entry.seq) 
+    assert_equal("efghgfe", @entry.qual) 
   end
 
   def test_Trim_quality_trim_with_all_low_qual_returns_correctly