# Method that converts a Read object's data to a Seq object.
def to_seq
- Seq.new(self.name, self.bases, nil, self.quality_scores.map { |i| (i += Seq::SCORE_BASE).chr }.join("") )
+ Seq.new(
+ seq_name: self.name,
+ seq: self.bases,
+ qual: self.quality_scores.map { |i| (i += Seq::SCORE_BASE).chr }.join("")
+ )
end
# Method that soft masks the sequence (i.e. lowercases sequence) according to