fixed unit tests for reverse and revcomp in seq.rb

[biopieces.git] / code_ruby / lib / maasha / seq.rb

diff --git a/code_ruby/lib/maasha/seq.rb b/code_ruby/lib/maasha/seq.rb
index 037f99dd9317a8c4057aae478cbcaefa2e9c9263..c1ce2daed2ca8f773cb2d985afc4c04238a02939 100644 (file)
--- a/code_ruby/lib/maasha/seq.rb
+++ b/code_ruby/lib/maasha/seq.rb
@@ -239,6 +239,7 @@ class Seq
   def reverse
     self.seq.reverse!
     self.qual.reverse! if self.qual
+    self
   end
 
   # Method that complements sequence including ambiguity codes.
@@ -327,6 +328,24 @@ class Seq
     self.subseq(start, length)
   end
 
+  def quality_trim(min)
+  end
+
+  def quality_trim_right(min)
+  end
+
+  def quality_trim_left(min)
+  end
+
+  def quality_trim!(min)
+  end
+
+  def quality_trim_right!(min)
+  end
+
+  def quality_trim_left!(min)
+  end
+
   # Method that returns the residue compositions of a sequence in
   # a hash where the key is the residue and the value is the residue
   # count.