addid missing S_END to sam.rb

[biopieces.git] / code_ruby / lib / maasha / sam.rb

diff --git a/code_ruby/lib/maasha/sam.rb b/code_ruby/lib/maasha/sam.rb
index d71862710baa4cb16e7d60874028882bec9fcdc0..ba9ffb0ed255e476e210a3eb7fbcd33f0a4d494c 100644 (file)
--- a/code_ruby/lib/maasha/sam.rb
+++ b/code_ruby/lib/maasha/sam.rb
@@ -63,6 +63,7 @@ class Sam < Filesys
     bp[:STRAND]   = sam[:FLAG].revcomp? ? '-' : '+'
     bp[:S_ID]     = sam[:RNAME]
     bp[:S_BEG]    = sam[:POS]
+    bp[:S_END]    = sam[:POS] + sam[:SEQ].length - 1
     bp[:MAPQ]     = sam[:MAPQ]
     bp[:CIGAR]    = sam[:CIGAR].to_s