added cigar.rb and test_cigar.rb

[biopieces.git] / code_ruby / lib / maasha / sam.rb

diff --git a/code_ruby/lib/maasha/sam.rb b/code_ruby/lib/maasha/sam.rb
index be4e9f4f929c2f015825b37c67c12525aa7b9156..79aa5ad26353212c243be40b7804b58ddeef1893 100644 (file)
--- a/code_ruby/lib/maasha/sam.rb
+++ b/code_ruby/lib/maasha/sam.rb
@@ -119,7 +119,7 @@ class Sam < Filesys
           deletions += 1
           offset    += 1
         end
-      else                # Mismatches
+      else               # Mismatches
         m.each_char do |nt|
           nt2 = sam[:SEQ].seq[offset - deletions]
 
@@ -130,7 +130,7 @@ class Sam < Filesys
       end
     end
 
-    align.sort_by { |a| a.first }.map { |k,v| "#{k}:#{v}" }.join(",")
+    align.sort_by { |a| a.first }.map { |k, v| "#{k}:#{v}" }.join(",")
   end
 
   # Method to initialize a Sam object.