beautifying fasta.rb

[biopieces.git] / code_ruby / lib / maasha / biopieces.rb

diff --git a/code_ruby/lib/maasha/biopieces.rb b/code_ruby/lib/maasha/biopieces.rb
index 5fd6edf4a505154bb929976a86c58246ac5d3f85..1d1deb55e1daf4a05f798e51071eca68ea441641 100644 (file)
--- a/code_ruby/lib/maasha/biopieces.rb
+++ b/code_ruby/lib/maasha/biopieces.rb
@@ -171,7 +171,7 @@ class Biopieces
   end
 
   # Class method for opening data stream for writing Biopiece records.
-  # Records are written to STDOU (default) or file.
+  # Records are written to STDOUT (default) or file.
   def self.open_output(output)
     if output.nil?
       output = self.new(STDOUT, stdio = true)
@@ -209,10 +209,10 @@ class Casts < Array
 
   # Add ubiquitous options casts.
   def ubiquitous
-    @cast_list << {:long=>'help',       :short=>'?', :type=>'flag',   :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
-    @cast_list << {:long=>'stream_in',  :short=>'I', :type=>'file!',  :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
-    @cast_list << {:long=>'stream_out', :short=>'O', :type=>'file',   :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
-    @cast_list << {:long=>'verbose',    :short=>'v', :type=>'flag',   :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
+    @cast_list << {:long=>'help',       :short=>'?', :type=>'flag',  :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
+    @cast_list << {:long=>'stream_in',  :short=>'I', :type=>'file!', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
+    @cast_list << {:long=>'stream_out', :short=>'O', :type=>'file',  :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
+    @cast_list << {:long=>'verbose',    :short=>'v', :type=>'flag',  :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
   end
 
   # Check integrity of the casts.