added bed2fixedstep.c

[biopieces.git] / code_c / Maasha / src / inc / ucsc.h

diff --git a/code_c/Maasha/src/inc/ucsc.h b/code_c/Maasha/src/inc/ucsc.h
index 291c05bcd901dd3bf18c8071c6f9f0027b1e3131..b932811bfed2efb2319465f7240b17ab0af95cb9 100644 (file)
--- a/code_c/Maasha/src/inc/ucsc.h
+++ b/code_c/Maasha/src/inc/ucsc.h
@@ -33,55 +33,55 @@ typedef struct _bed_entry bed_entry;
 bed_entry *bed_entry_new( const int cols );
 
 /* Free memory for a BED entry. */
-void       bed_entry_destroy( bed_entry *entry );
+void bed_entry_destroy( bed_entry *entry );
 
-/* Get next BED entry of a given number of columns from a file pointer. */
-bed_entry *bed_entry_get( FILE *fp, const int cols );
+/* Get next BED entry from a file stream. */
+bool bed_entry_get( FILE *fp, bed_entry **entry_ppt );
 
 /* Get a singly linked list with all BED entries (of a given number of coluns */
 /* from a specified file. */
-list_sl   *bed_entries_get( char *path, const int cols );
+list_sl *bed_entries_get( char *path, const int cols );
 
 /* Output a given number of columns from a BED entry to stdout. */
-void       bed_entry_put( bed_entry *entry, int cols );
+void bed_entry_put( bed_entry *entry, int cols );
 
 /* Output a given number of columns from all BED entries */
 /* in a singly linked list. */
-void       bed_entries_put( list_sl *entries, int cols );
+void bed_entries_put( list_sl *entries, int cols );
 
 /* Free memory for all BED entries and list nodes. */
-void       bed_entries_destroy( list_sl **entries_ppt );
+void bed_entries_destroy( list_sl **entries_ppt );
 
 /* Given a path to a BED file, read the given number of cols */
 /* according to the begin position. The result is written to stdout. */
-void       bed_file_sort_beg( char *path, int cols );
+void bed_file_sort_beg( char *path, int cols );
 
 /* Given a path to a BED file, read the given number of cols */
 /* according to the strand AND begin position. The result is written to stdout. */
-void       bed_file_sort_strand_beg( char *path, int cols );
+void bed_file_sort_strand_beg( char *path, int cols );
 
 /* Given a path to a BED file, read the given number of cols */
 /* according to the chromosome AND begin position. The result is written to stdout. */
-void       bed_file_sort_chr_beg( char *path, int cols );
+void bed_file_sort_chr_beg( char *path, int cols );
 
 /* Given a path to a BED file, read the given number of cols */
 /* according to the chromosome AND strand AND begin position. The result is written to stdout. */
-void       bed_file_sort_chr_strand_beg( char *path, int cols );
+void bed_file_sort_chr_strand_beg( char *path, int cols );
 
 /* Compare function for sorting a singly linked list of BED entries */
 /* according to begin position. */
-int        cmp_bed_sort_beg( const void *a, const void *b );
+int cmp_bed_sort_beg( const void *a, const void *b );
 
 /* Compare function for sorting a singly linked list of BED entries */
 /* according to strand AND begin position. */
-int        cmp_bed_sort_strand_beg( const void *a, const void *b );
+int cmp_bed_sort_strand_beg( const void *a, const void *b );
 
 /* Compare function for sorting a singly linked list of BED entries */
 /* according to chromosome name AND begin position. */
-int        cmp_bed_sort_chr_beg( const void *a, const void *b );
+int cmp_bed_sort_chr_beg( const void *a, const void *b );
 
 /* Compare function for sorting a singly linked list of BED entries */
 /* according to chromosome name AND strand AND begin position. */
-int        cmp_bed_sort_chr_strand_beg( const void *a, const void *b );
+int cmp_bed_sort_chr_strand_beg( const void *a, const void *b );