minor updates

[biopieces.git] / code_c / Maasha / src / inc / common.h

diff --git a/code_c/Maasha/src/inc/common.h b/code_c/Maasha/src/inc/common.h
index 320f0a99acafcd89bc676aae87b1e465399d0355..4d33bf7f94665b6527ba36295a9a081fa4c751f4 100644 (file)
--- a/code_c/Maasha/src/inc/common.h
+++ b/code_c/Maasha/src/inc/common.h
@@ -1,3 +1,5 @@
+/* Martin Asser Hansen (mail@maasha.dk) Copyright (C) 2008 - All right reserved */
+
 /* Including standard libraries */
 #include <stdio.h>
 #include <stdlib.h>
@@ -8,14 +10,24 @@
 #include <math.h>
 #include <assert.h>
 #include <errno.h>
+#include <getopt.h>
+
+typedef unsigned char uchar;
+typedef unsigned short ushort;
+typedef long long llong;
+typedef char boolean;
 
-/* Define a shorthand for unsigned int */
-#define uint unsigned int
+#ifndef bool
+#define bool boolean
+#endif
 
-/* Define a boolean type */
-#define bool char
+#ifndef TRUE
 #define TRUE 1
+#endif
+
+#ifndef FALSE
 #define FALSE 0
+#endif
 
 /* Macros for determining min or max of two given values. */
 #define MAX( a, b ) a < b ? b : a
@@ -25,53 +37,19 @@
 #define ABS( x ) ( ( x ) < 0 ) ? -( x ) : ( x )
 #define INT( x ) ( int ) x
 
+/* Neat debug macro. */
+#define DEBUG_EXIT 0
 
-/* >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> STRUCTURE DECLARATIONS <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<*/
-
-
-// At some point test if typdef struct list list will allow us to move all this stuff to list.h and list.c
-
-
-/* Singly linked list with a pointer to the next element and a pointer to a value. */
-struct list
-{
-    struct list *next;
-    void        *val;
-};
-
-/* Singly linked list with a pointer to the next element and an integer value. */
-struct list_int
-{
-    struct list *next;
-    int          val;
-};
-
-
-/* >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ERROR HANDLING <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<*/
-
-
-/* Print error message to stderr and exit. */
-void die( char *error_msg );
-
-/* Print warning message to stderr. */
-void warn( char *warn_msg );
-
-
-/* >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ARRAYS <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<*/
-
-
-/* Binary search an array of integers for an integer value. */
-bool binary_search_array( int *array, int array_size, int val );
+#ifndef die
+#define die assert( DEBUG_EXIT )
+#endif
 
 
 /* >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> MISC <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<*/
 
 
-/* Split a given line and a delimiter return the split result as a list. */
-void  split( char *string, char delimit, struct list **fields );
-    
-/* Mockup version of Perl substr. */
-char *substr( char *string, int offset, int len );
+/* Function that prints "pong" to stderr. */
+void maasha_ping();
 
 /* Return a binary number as a string of 1's and 0's. */
 char *bits2string( uint bin );