added bed2fixedstep.c

[biopieces.git] / code_c / Maasha / src / Makefile

diff --git a/code_c/Maasha/src/Makefile b/code_c/Maasha/src/Makefile
index 4312b1fd7bfc2b5709207781704768e928ac42c8..884817b497ae15e82e1882d3150248322b6da18f 100644 (file)
--- a/code_c/Maasha/src/Makefile
+++ b/code_c/Maasha/src/Makefile
@@ -11,7 +11,7 @@ TEST_DIR = test/
 INC = -I $(INC_DIR)
 LIB = -lm $(LIB_DIR)*.o
 
-all: libs utest bed_sort bipartite_scan fasta_count repeat-O-matic
+all: libs utest bed2fixedstep bed_sort bipartite_scan bipartite_decode fasta_count repeat-O-matic
 
 libs:
        cd $(LIB_DIR) && ${MAKE} all
@@ -19,12 +19,18 @@ libs:
 utest:
        cd $(TEST_DIR) && ${MAKE} all
 
+bed2fixedstep: bed2fixedstep.c
+       $(CC) $(Cflags) $(INC) $(LIB) bed2fixedstep.c -o bed2fixedstep
+
 bed_sort: bed_sort.c
        $(CC) $(Cflags) $(INC) $(LIB) bed_sort.c -o bed_sort
 
 bipartite_scan: bipartite_scan.c
        $(CC) $(Cflags) $(INC) $(LIB) bipartite_scan.c -o bipartite_scan
 
+bipartite_decode: bipartite_decode.c
+       $(CC) $(Cflags) $(INC) $(LIB) bipartite_decode.c -o bipartite_decode
+
 fasta_count: fasta_count.c
        $(CC) $(Cflags) $(INC) $(LIB) fasta_count.c -o fasta_count
 
@@ -34,7 +40,9 @@ repeat-O-matic: repeat-O-matic.c
 clean:
        cd $(LIB_DIR) && ${MAKE} clean
        cd $(TEST_DIR) && ${MAKE} clean
+       rm bed2fixedstep
        rm bed_sort
        rm bipartite_scan
+       rm bipartite_decode
        rm fasta_count
        rm repeat-O-matic