fixed bug in remove_indels

[biopieces.git] / code_c / Maasha / src / Makefile

diff --git a/code_c/Maasha/src/Makefile b/code_c/Maasha/src/Makefile
index d1e8d844e0f60e26564966e73afc51e83e7ad3b2..5ac2879621170d6029d876c5c0aa3011598b0e81 100644 (file)
--- a/code_c/Maasha/src/Makefile
+++ b/code_c/Maasha/src/Makefile
@@ -1,8 +1,8 @@
 # Martin Asser Hansen (mail@maasha.dk) Copyright (C) 2008 - All right reserved
 
 CC      = gcc
-# Cflags = -Wall -Werror
-Cflags = -Wall -Werror -g -pg # for gprof
+# CFLAGS = -Wall -Werror
+CFLAGS = -Wall -Werror -g -pg # for gprof
 
 INC_DIR  = inc/
 LIB_DIR  = lib/
@@ -20,25 +20,25 @@ utest:
        cd $(TEST_DIR) && ${MAKE} all
 
 bed2fixedstep: bed2fixedstep.c
-       $(CC) $(Cflags) $(INC) $(LIB) bed2fixedstep.c -o bed2fixedstep
+       $(CC) $(CFLAGS) $(INC) $(LIB) bed2fixedstep.c -o bed2fixedstep
 
 bed2tag_contigs: bed2tag_contigs.c
-       $(CC) $(Cflags) $(INC) $(LIB) bed2tag_contigs.c -o bed2tag_contigs
+       $(CC) $(CFLAGS) $(INC) $(LIB) bed2tag_contigs.c -o bed2tag_contigs
 
 bed_sort: bed_sort.c
-       $(CC) $(Cflags) $(INC) $(LIB) bed_sort.c -o bed_sort
+       $(CC) $(CFLAGS) $(INC) $(LIB) bed_sort.c -o bed_sort
 
 bipartite_scan: bipartite_scan.c
-       $(CC) $(Cflags) $(INC) $(LIB) bipartite_scan.c -o bipartite_scan
+       $(CC) $(CFLAGS) $(INC) $(LIB) bipartite_scan.c -o bipartite_scan
 
 bipartite_decode: bipartite_decode.c
-       $(CC) $(Cflags) $(INC) $(LIB) bipartite_decode.c -o bipartite_decode
+       $(CC) $(CFLAGS) $(INC) $(LIB) bipartite_decode.c -o bipartite_decode
 
 fasta_count: fasta_count.c
-       $(CC) $(Cflags) $(INC) $(LIB) fasta_count.c -o fasta_count
+       $(CC) $(CFLAGS) $(INC) $(LIB) fasta_count.c -o fasta_count
 
 repeat-O-matic: repeat-O-matic.c
-       $(CC) $(Cflags) $(INC) $(LIB) repeat-O-matic.c -o repeat-O-matic
+       $(CC) $(CFLAGS) $(INC) $(LIB) repeat-O-matic.c -o repeat-O-matic
 
 clean:
        cd $(LIB_DIR) && ${MAKE} clean