public:
ClusterCommand(string);
+ ClusterCommand();
~ClusterCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
RAbundVector oldRAbund;
ListVector oldList;
- bool abort;
+ bool abort, hard;
string method, fileroot, tag, outputDir;
double cutoff;
void printData(string label);
vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
};
#endif