class ChimeraSeqsCommand : public Command {
public:
ChimeraSeqsCommand(string);
+ ChimeraSeqsCommand() {}
~ChimeraSeqsCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map< string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
private:
+ vector<string> outputNames;
+ map< string, vector<string> > outputTypes;
};