assert_no_diff $tmp $out.2
clean
+run "$bp -I $in.1 -F CATGCCGCCA -r GCGAACGGGT -m 0 -i 0 -d 0 -O $tmp"
+assert_no_diff $tmp $out.2
+clean
+
run "$bp -I $in.1 -f TGGCGGCATG -R ACCCGTTCGC -m 0 -i 0 -d 0 -O $tmp"
assert_no_diff $tmp $out.2
clean
assert_no_diff $tmp $out.3
clean
+run "$bp -I $in.1 -b 5 -e 10 -t $in.2 -O $tmp"
+assert_no_diff $tmp $out.4
+clean