updated testing files for find_adaptor and clip_adaptor

[biopieces.git] / bp_test / test / test_read_fastq

diff --git a/bp_test/test/test_read_fastq b/bp_test/test/test_read_fastq
index 82b220c2d87909225e4f34959db7219ad510120b..6c597640c5880e7adbbafb473de478d20f8a9e5e 100755 (executable)
--- a/bp_test/test/test_read_fastq
+++ b/bp_test/test/test_read_fastq
@@ -2,14 +2,18 @@
 
 source "$BP_DIR/bp_test/lib/test.sh"
 
-run "$bp -i $in -O $tmp"
+run "$bp -i $in.1 -O $tmp"
 assert_no_diff $tmp $out.1
 clean
 
-run "$bp -i $in.gz -O $tmp"
-assert_no_diff $tmp $out.1
+run "$bp -i $in.2 -O $tmp"
+assert_no_diff $tmp $out.2
 clean
 
-run "$bp -i $in -n 1 -O $tmp"
+run "$bp -i $in.2.gz -O $tmp"
 assert_no_diff $tmp $out.2
 clean
+
+run "$bp -i $in.2 -n 1 -O $tmp"
+assert_no_diff $tmp $out.3
+clean