fixed encoding bug in read_454

[biopieces.git] / bp_test / test / test_find_adaptor

diff --git a/bp_test/test/test_find_adaptor b/bp_test/test/test_find_adaptor
index cbbe4a79a2d08744b9dccc51e8d6d65af68cea7f..19f68fdad5e14815aee66db39378ae71cb835a53 100755 (executable)
--- a/bp_test/test/test_find_adaptor
+++ b/bp_test/test/test_find_adaptor
@@ -2,22 +2,42 @@
 
 source "$BP_DIR/bp_test/lib/test.sh"
 
-run "$bp -a TCGTATGCCGTCTTCTGCTTG -m 0 -i 0 -d 0 -I $in -O $tmp"
+run "$bp -m 0 -i 0 -d 0 -f TCGTATGCCGTCTTCTGCTT -I $in -O $tmp"
 assert_no_diff $tmp $out.1
 clean
 
-run "$bp -a TCGTATGCCGTCTTCTGCTTG -m 0 -i 0 -d 0 -p -l 5 -I $in -O $tmp"
+run "$bp -m 0 -i 0 -d 0 -F TCGTATGCCGTCTTCTGCTT -I $in -O $tmp"
 assert_no_diff $tmp $out.2
 clean
 
-run "$bp -a TCGTATGCCGTCTTCTGCTTG -m 10 -i 0 -d 0 -I $in -O $tmp"
+run "$bp -m 0 -i 0 -d 0 -r TGACTACGACTACGACTACT -I $in -O $tmp"
 assert_no_diff $tmp $out.3
 clean
 
-run "$bp -a TCGTATGCCGTCTTCTGCTTG -m 0 -i 10 -d 0 -I $in -O $tmp"
+run "$bp -m 0 -i 0 -d 0 -R TGACTACGACTACGACTACT -I $in -O $tmp"
 assert_no_diff $tmp $out.4
 clean
 
-run "$bp -a TCGTATGCCGTCTTCTGCTTG -m 0 -i 0 -d 10 -I $in -O $tmp"
+run "$bp -m 0 -i 0 -d 0 -f TCGTATGCCGTCTTCTGCTT -r TGACTACGACTACGACTACT -I $in -O $tmp"
 assert_no_diff $tmp $out.5
 clean
+
+run "$bp -m 0 -i 0 -d 0 -f TCGTATGCCGTCTTCTGCTT -l 1 -r TGACTACGACTACGACTACT -I $in -O $tmp"
+assert_no_diff $tmp $out.6
+clean
+
+run "$bp -m 0 -i 0 -d 0 -f TCGTATGCCGTCTTCTGCTT -l 1 -r TGACTACGACTACGACTACT -L 1 -I $in -O $tmp"
+assert_no_diff $tmp $out.7
+clean
+
+run "$bp -m 10 -i 0 -d 0 -f TCGTATGCCGTCTTCTGCTT -r TGACTACGACTACGACTACT -I $in -O $tmp"
+assert_no_diff $tmp $out.8
+clean
+
+run "$bp -m 0 -i 10 -d 0 -f TCGTATGCCGTCTTCTGCTT -r TGACTACGACTACGACTACT -I $in -O $tmp"
+assert_no_diff $tmp $out.9
+clean
+
+run "$bp -m 0 -i 0 -d 10 -f TCGTATGCCGTCTTCTGCTT -r TGACTACGACTACGACTACT -I $in -O $tmp"
+assert_no_diff $tmp $out.10
+clean