run "$bp -I $in.2 -d $tmp_dir/nucleotide -O $tmp"
assert_no_diff $tmp $out.1
-rm $tmp
+clean
run "$bp -I $in.2 -d $tmp_dir/protein -O $tmp"
assert_no_diff $tmp $out.2
-rm $tmp
+clean
run "$bp -I $in.4 -d $tmp_dir/nucleotide -O $tmp"
assert_no_diff $tmp $out.3
-rm $tmp
+clean
run "$bp -I $in.4 -d $tmp_dir/protein -O $tmp"
assert_no_diff $tmp $out.4
-rm $tmp
+clean
run "$bp -I $in.2 -d $tmp_dir/nucleotide -p tblastx -O $tmp"
assert_no_diff $tmp $out.5
-rm $tmp
+clean
rm -rf $tmp_dir