]>
git.donarmstrong.com Git - biopieces.git/blobdiff - bp_test/out/find_homopolymers.out.2
SEQ_NAME: test1
SEQ: attcccggggnnnnn
SEQ_LEN: 15
-HOMOPOL_MAX: 5
+HOMOPOL_PAT: CCC
+HOMOPOL_LEN: 3
+HOMOPOL_POS: 3
+---
+SEQ_NAME: test1
+SEQ: attcccggggnnnnn
+SEQ_LEN: 15
+HOMOPOL_PAT: GGGG
+HOMOPOL_LEN: 4
+HOMOPOL_POS: 6
+---
+SEQ_NAME: test1
+SEQ: attcccggggnnnnn
+SEQ_LEN: 15
+HOMOPOL_PAT: NNNNN
+HOMOPOL_LEN: 5
+HOMOPOL_POS: 10
+---
+SEQ_NAME: test2
+SEQ: nnnnnggggccctta
+SEQ_LEN: 15
+HOMOPOL_PAT: NNNNN
+HOMOPOL_LEN: 5
+HOMOPOL_POS: 0
+---
+SEQ_NAME: test2
+SEQ: nnnnnggggccctta
+SEQ_LEN: 15
+HOMOPOL_PAT: GGGG
+HOMOPOL_LEN: 4
+HOMOPOL_POS: 5
---
SEQ_NAME: test2
SEQ: nnnnnggggccctta
SEQ_LEN: 15
-HOMOPOL_MAX: 5
+HOMOPOL_PAT: CCC
+HOMOPOL_LEN: 3
+HOMOPOL_POS: 9
---
SEQ_NAME: test3
SEQ: a
SEQ_LEN: 1
-HOMOPOL_MAX: 0
---
SEQ_NAME: test4
SEQ: aA
SEQ_LEN: 2
-HOMOPOL_MAX: 0
---