cleanup of analyze_vals added analyze_scores

[biopieces.git] / bp_test / in / find_adaptor.in

diff --git a/bp_test/in/find_adaptor.in b/bp_test/in/find_adaptor.in
index 960ea228ef4281b270d055bb0b9b674eeb4df40b..8454bfa3241764786ad94e71f3aa07b44f02cf0c 100644 (file)
--- a/bp_test/in/find_adaptor.in
+++ b/bp_test/in/find_adaptor.in
@@ -1,32 +1,88 @@
-SEQ_NAME: test_full_length_adaptor
-SEQ: TCGTATGCCGTCTTCTGCTTG
-SEQ_LEN: 21
+SEQ_NAME: test_full_length_match_forward
+SEQ: TCGTATGCCGTCTTCTGCTT
+SEQ_LEN: 20
 ---
-SEQ_NAME: test_begin_match
-SEQ: TCGTATGCCGTCTTCTGCTTGactacgt
-SEQ_LEN: 28
+SEQ_NAME: test_begin_match_forward
+SEQ: TCGTATGCCGTCTTCTGCTTactacgt
+SEQ_LEN: 27
+---
+SEQ_NAME: test_middle_match_forward
+SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgt
+SEQ_LEN: 36
+---
+SEQ_NAME: test_end_match_forward
+SEQ: gactgaTCGTATGCCGTCTTCTGCTT
+SEQ_LEN: 26
+---
+SEQ_NAME: test_full_length_match_forward_rc
+SEQ: AAGCAGAAGACGGCATACGA
+SEQ_LEN: 20
+---
+SEQ_NAME: test_begin_match_forward_rc
+SEQ: AAGCAGAAGACGGCATACGAactacgt
+SEQ_LEN: 27
+---
+SEQ_NAME: test_middle_match_forward_rc
+SEQ: actgactgaAAGCAGAAGACGGCATACGAactacgt
+SEQ_LEN: 36
+---
+SEQ_NAME: test_end_match_forward_rc
+SEQ: gactgaAAGCAGAAGACGGCATACGA
+SEQ_LEN: 26
 ---
-SEQ_NAME: test_middle_match
-SEQ: actgactgaTCGTATGCCGTCTTCTGCTTGactacgt
-SEQ_LEN: 37
+SEQ_NAME: test_full_length_match_reverse
+SEQ: TGACTACGACTACGACTACT
+SEQ_LEN: 20
 ---
-SEQ_NAME: test_end_match
-SEQ: gactgaTCGTATGCCGTCTTCTGCTTG
+SEQ_NAME: test_begin_match_reverse
+SEQ: TGACTACGACTACGACTACTactacgt
 SEQ_LEN: 27
 ---
-SEQ_NAME: test_pos_begin
-SEQ: gactgaTCGTATGCCGTCTTCTGCTTGgactgaTCGTATGCCGTCTTCTGCTTGacgta
-SEQ_LEN: 59
+SEQ_NAME: test_middle_match_reverse
+SEQ: actgactgaTGACTACGACTACGACTACTactacgt
+SEQ_LEN: 36
+---
+SEQ_NAME: test_end_match_reverse
+SEQ: gactgaTGACTACGACTACGACTACT
+SEQ_LEN: 26
+---
+SEQ_NAME: test_full_length_match_reverse_rc
+SEQ: AGTAGTCGTAGTCGTAGTCA
+SEQ_LEN: 20
+---
+SEQ_NAME: test_begin_match_reverse_rc
+SEQ: AGTAGTCGTAGTCGTAGTCAactacgt
+SEQ_LEN: 27
 ---
-SEQ_NAME: test_edit_dist_5
-SEQ: actgactgaTCGGATGCGGTCTCATGTTGactacgt
+SEQ_NAME: test_middle_match_reverse_rc
+SEQ: actgactgaAGTAGTCGTAGTCGTAGTCAactacgt
 SEQ_LEN: 36
 ---
-SEQ_NAME: test_end_trim
-SEQ: gtgacactatcgatacgatcgacactgaTCGTA
-SEQ_LEN: 33
+SEQ_NAME: test_end_match_reverse_rc
+SEQ: gactgaAGTAGTCGTAGTCGTAGTCA
+SEQ_LEN: 26
+---
+SEQ_NAME: test_forward_and_reverse_match
+SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
+SEQ_LEN: 72
+---
+SEQ_NAME: test_forward_partial_match
+SEQ: GTCTTCTGCTTactacgtactgactgaTGACTACGACTACGACTACTactacgt
+SEQ_LEN: 54
+---
+SEQ_NAME: test_reverse_partial_match
+SEQ: actgactgaTCGTATGCCGTCTTCTGCTTactacgtactgactgaTGACTACGAC
+SEQ_LEN: 55
+---
+SEQ_NAME: test_forward_and_reverse_match_with_mismatch
+SEQ: actgactgaTCGTAccCCGTCTTCTGCTTactacgtactgactgaTGACTACGAggACGACTACTactacgt
+SEQ_LEN: 72
+---
+SEQ_NAME: test_forward_and_reverse_match_with_insertion
+SEQ: actgactgaTCGTATCGTCTTCTGCTTactacgtactgactgaTGACTACGACCGACTACTactacgt
+SEQ_LEN: 68
 ---
-SEQ_NAME: test_end_trim_edit_dist_1
-SEQ: gatgatcgtagcgatcgatcgacgctgaTCGTG
-SEQ_LEN: 33
+SEQ_NAME: test_forward_and_reverse_match_with_deletion
+SEQ: actgactgaTCGTATGaaCCGTCTTCTGCTTactacgtactgactgaTGACTACGACTAaaCGACTACTactacgt
+SEQ_LEN: 76
 ---