added test for align dir

[biopieces.git] / bp_test / in / clip_adaptor.in

diff --git a/bp_test/in/clip_adaptor.in b/bp_test/in/clip_adaptor.in
index dd0bce5155a8e2031e63eb82f1c0f67c2e94b398..13d1a4b08b78bea8b6774a85a892be97a060f707 100644 (file)
--- a/bp_test/in/clip_adaptor.in
+++ b/bp_test/in/clip_adaptor.in
@@ -1,8 +1,38 @@
-SEQ_NAME: 3_XeZ3OvwXsN1/1
-SEQ: CGCGAATCGGACTGGATNTCGCCGCTGACGACCTC
-SEQ_LEN: 35
-SCORES: a`_aa_^````\TY``WDGU[BBBBBBBBBBBBBB
-ADAPTOR_POS: 26
-ADAPTOR_LEN: 9
-ADAPTOR_MATCH: GACGACCTC
+SEQ_NAME: test
+SEQ: GATCGATCGTacgagcagcatctgacgtatcgatcgttgattagttgctagctatgcagtctacgacgagcaTGCTAGCTAG
+SEQ_LEN: 82
+SCORES: @ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghhgfedcba`_^]\[ZYXWVUTSRQPONMLKJIHGFEDChhh
+ADAPTOR_POS_LEFT: 0
+ADAPTOR_LEN_LEFT: 10
+ADAPTOR_PAT_LEFT: gatcgatcgt
+---
+SEQ_NAME: test
+SEQ: GATCGATCGTacgagcagcatctgacgtatcgatcgttgattagttgctagctatgcagtctacgacgagcaTGCTAGCTAG
+SEQ_LEN: 82
+SCORES: @ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghhgfedcba`_^]\[ZYXWVUTSRQPONMLKJIHGFEDChhh
+ADAPTOR_POS_RIGHT: 72
+ADAPTOR_LEN_RIGHT: 10
+ADAPTOR_PAT_RIGHT: tgctagctag
+---
+SEQ_NAME: test
+SEQ: GATCGATCGTacgagcagcatctgacgtatcgatcgttgattagttgctagctatgcagtctacgacgagcaTGCTAGCTAG
+SEQ_LEN: 82
+SCORES: @ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghhgfedcba`_^]\[ZYXWVUTSRQPONMLKJIHGFEDChhh
+ADAPTOR_POS_LEFT: 0
+ADAPTOR_LEN_LEFT: 10
+ADAPTOR_PAT_LEFT: gatcgatcgt
+ADAPTOR_POS_RIGHT: 72
+ADAPTOR_LEN_RIGHT: 10
+ADAPTOR_PAT_RIGHT: tgctagctag
+---
+SEQ_NAME: test
+SEQ: GATCGATCGTacgagcagcatctgacgtatcgatcgttgattagttgctagctatgcagtctacgacgagcaTGCTAGCTAG
+SEQ_LEN: 82
+SCORES: @ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghhgfedcba`_^]\[ZYXWVUTSRQPONMLKJIHGFEDChhh
+ADAPTOR_POS_LEFT: 72
+ADAPTOR_LEN_LEFT: 10
+ADAPTOR_PAT_LEFT: tgctagctag
+ADAPTOR_POS_RIGHT: 0
+ADAPTOR_LEN_RIGHT: 10
+ADAPTOR_PAT_RIGHT: gatcgatcgt
 ---