refactoring of assemble_pairs

[biopieces.git] / bp_scripts / trim_seq.sh

diff --git a/bp_scripts/trim_seq.sh b/bp_scripts/trim_seq.sh
index 60839aa59ac2cbd17de087acbaaf3265f916f878..7866c740fcc72f75e21a704d0f472c5508f473a2 100755 (executable)
--- a/bp_scripts/trim_seq.sh
+++ b/bp_scripts/trim_seq.sh
@@ -5,11 +5,11 @@
 
 pid=$$
 
-plot_scores -t post -o trim_seq_scores_pretrim.$pid.ps |
-plot_lendist -k SEQ_LEN -t post -o trim_seq_lendist_pretrim.$pid.ps |
+plot_scores -t post -o 00_trim_seq_scores_pretrim.$pid.ps |
+plot_lendist -k SEQ_LEN -t post -o 01_trim_seq_lendist_pretrim.$pid.ps |
 trim_seq |
 grab -e "SEQ_LEN>=30" |
 mean_scores -l |
 grab -e "SCORES_LOCAL_MEAN>=15" |
-plot_scores -t post -o trim_seq_scores_posttrim.$pid.ps |
-plot_lendist -k SEQ_LEN -t post -o trim_seq_lendist_posttrim.$pid.ps 
+plot_scores -t post -o 02_trim_seq_scores_posttrim.$pid.ps |
+plot_lendist -k SEQ_LEN -t post -o 03_trim_seq_lendist_posttrim.$pid.ps