find_adaptor -a $adaptor -p |
plot_histogram -t post -o 01_remove_adaptor_histogram_adaptor_pos.$pid.ps -k ADAPTOR_POS -s num |
plot_lendist -t post -o 02_remove_adaptor_lendist_adaptor_len.$pid.ps -k ADAPTOR_LEN |
-plot_lendist -t post -o 03_remove_adaptor_lendist_seq_after.$pid.ps -k SEQ_LEN |
-analyze_vals -k ADAPTOR_POS,ADAPTOR_LEN -o 04_remove_adaptor_analyze_vals.$pid.txt |
+analyze_vals -k ADAPTOR_POS,ADAPTOR_LEN -o 03_remove_adaptor_analyze_vals.$pid.txt |
clip_adaptor |
plot_scores -t post -o 04_trim_seq_scores_pretrim.$pid.ps |
plot_lendist -k SEQ_LEN -t post -o 05_trim_seq_lendist_pretrim.$pid.ps |