added -c to nuc dist plot

[biopieces.git] / bp_scripts / QA_Illumina_report.rb

diff --git a/bp_scripts/QA_Illumina_report.rb b/bp_scripts/QA_Illumina_report.rb
index 3139d49127b1e3a796c4e30cc819f3314df94f14..f5b426f0a5e0987b6e73f860f176de2bdfef4212 100755 (executable)
--- a/bp_scripts/QA_Illumina_report.rb
+++ b/bp_scripts/QA_Illumina_report.rb
@@ -78,7 +78,7 @@ system(
    analyze_vals -k SEQ -o #{analyze_vals_trim_noadapt_file} |
    plot_distribution -k SEQ_LEN -T 'Sequence length distribution' -X 'Sequence length' -t png -o #{lendist_file} |
    plot_scores -c -t png -o #{scores_file} |
-   plot_nucleotide_distribution -t png -o #{nucdist_file} |
+   plot_nucleotide_distribution -c -t png -o #{nucdist_file} |
    bin_vals -k SEQ_LEN -b 25 |
    plot_distribution -T '25 bases bin sequence length distribution' -X 'Sequence length' -k SEQ_LEN_BIN -t png -o #{lendist_bin_file} |
    mean_scores |