more power to the QA

[biopieces.git] / bp_scripts / QA_Illumina_report.rb

diff --git a/bp_scripts/QA_Illumina_report.rb b/bp_scripts/QA_Illumina_report.rb
index 2655b10a4856076fa41a88254db65e8e7e811459..d7deb9244d7a3328794bdfcb1c33f310c30be71b 100755 (executable)
--- a/bp_scripts/QA_Illumina_report.rb
+++ b/bp_scripts/QA_Illumina_report.rb
@@ -72,7 +72,7 @@ system(
    trim_seq -l 3 -m 25 |
    grab -e 'SEQ_LEN > 0' |
    analyze_vals -k SEQ -o #{analyze_vals_trim_file} |
-   find_adaptor -l 6 -L 6 -f ACACGACGCTCTTCCGATCT -r AGATCGGAAGAGCACACGTC |
+   find_adaptor -c 12 -l 6 -L 6 -f ACACGACGCTCTTCCGATCT -r AGATCGGAAGAGCACACGTC |
    clip_adaptor |
    grab -e 'SEQ_LEN > 0' |
    analyze_vals -k SEQ -o #{analyze_vals_trim_noadapt_file} |