trim_seq -l 3 -m 25 |
grab -e 'SEQ_LEN > 0' |
analyze_vals -k SEQ -o #{analyze_vals_trim_file} |
- find_adaptor -l 6 -L 6 -f ACACGACGCTCTTCCGATCT -r AGATCGGAAGAGCACACGTC |
+ find_adaptor -c 12 -l 6 -L 6 -f ACACGACGCTCTTCCGATCT -r AGATCGGAAGAGCACACGTC |
clip_adaptor |
grab -e 'SEQ_LEN > 0' |
analyze_vals -k SEQ -o #{analyze_vals_trim_noadapt_file} |
</table>
<p>Sequence trimming was performed by removing from the ends all residues until 3 consecutive</p>
<p>residues with quality score larger than or equal to 25.</p>
- <p>All plots are after sequence trimming.</p>
+ <p>All plots are after sequence trimming and adaptor removal.</p>
<h2>Sequence length distribution</h2>
<p><img src="<%= png2base64(lendist_file) %>" width="600" /></p>
<p><img src="<%= png2base64(lendist_bin_file) %>" width="600" /></p>