fixed encoding bug in read_454

[biopieces.git] / bp_conf / bashrc

diff --git a/bp_conf/bashrc b/bp_conf/bashrc
index 0a113aee592c30a3c4b1a7f8502d2a09e4f9dadc..ac5ace41d921a049878be187f38a775f27d383da 100644 (file)
--- a/bp_conf/bashrc
+++ b/bp_conf/bashrc
@@ -1,5 +1,7 @@
 ### >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
+### DO NOT MAKE ANY CHANGES
+
 ### Stuff that enables Biopieces.
 
 ### BP_DIR, BP_DATA, BP_TMP, and BP_LOG should all be set in ~/.bashrc
@@ -16,6 +18,10 @@ export BP_C="$BP_DIR/code_c"                # Direcotory with C code.
 export BP_PYTHON="$BP_DIR/code_python"      # Direcotory with Pyton code.
 export BP_RUBY="$BP_DIR/code_ruby"          # Direcotory with Ruby code.
 
+### This is the directory with the document root fro the Biopieces Genome Browser:
+
+export BP_WWW="$BP_DIR/www"                 # Direcotory with Biopieces Genome Browser.
+
 ### Here we add the biopiece variable to the existing PATH.
 
 export PATH="$PATH:$BP_BIN"
@@ -26,7 +32,12 @@ export PERL5LIB="$PERL5LIB:$BP_PERL"
 
 ### Here we add the Biopieces Ruby libraries to RUBYLIB.
 
-export RUBYLIB="$RUBYLIB:$BP_RUBY"
+export RUBYLIB="$RUBYLIB:$BP_RUBY/lib"
+
+### Some useful aliases.
+
+alias bp_update="svn update $BP_DIR && svn update $BP_DIR/bp_usage"
+alias bp_test="$BP_DIR/bp_test/test_all"
 
 ### >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<