added usearch_seq biopiece

[biopieces.git] / bp_conf / bashrc

diff --git a/bp_conf/bashrc b/bp_conf/bashrc
index 473e0c5fc8e03023252c29371286bd877c74acd0..17d9c1a293059ef6c40beb81ec31a2ec031bb58d 100644 (file)
--- a/bp_conf/bashrc
+++ b/bp_conf/bashrc
@@ -11,10 +11,14 @@ export BP_BIN="$BP_DIR/bp_bin"              # Directory with biopiece executable
 
 ### The following directories hold the biopiece libraries, modules, gems, etc - one per programming language.
 
-export BP_PERL="$BP_DIR/code_perl"          # Direcotry with Perl code.
-export BP_C="$BP_DIR/code_c"                # Direcotry with c code.
-export BP_PYTHON="$BP_DIR/code_python"      # Direcotry with Pyton code.
-export BP_RUBY="$BP_DIR/code_ruby"          # Direcotry with Ruby code.
+export BP_PERL="$BP_DIR/code_perl"          # Direcotory with Perl code.
+export BP_C="$BP_DIR/code_c"                # Direcotory with C code.
+export BP_PYTHON="$BP_DIR/code_python"      # Direcotory with Pyton code.
+export BP_RUBY="$BP_DIR/code_ruby"          # Direcotory with Ruby code.
+
+### This is the directory with the document root fro the Biopieces Genome Browser:
+
+export BP_WWW="$BP_DIR/www"                 # Direcotory with Biopieces Genome Browser.
 
 ### Here we add the biopiece variable to the existing PATH.
 
@@ -26,12 +30,7 @@ export PERL5LIB="$PERL5LIB:$BP_PERL"
 
 ### Here we add the Biopieces Ruby libraries to RUBYLIB.
 
-export RUBYLIB="$RUBYLIB:$BP_RUBY"
-
-### Alias allowing power scripting with biopieces.
-
-alias bioscript="perl -MMaasha::Biopieces=read_stream,get_record,put_record -e"
-
+export RUBYLIB="$RUBYLIB:$BP_RUBY/Maasha/lib"
 
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