updated list_genomes wiki and bashrc

[biopieces.git] / bp_conf / bashrc

diff --git a/bp_conf/bashrc b/bp_conf/bashrc
index 10814f1a41559306f36e580fd3e4a20f4d5a6e7a..06563c6d2d86ee4ff66323d8aec9f1cd2ad49dfa 100644 (file)
--- a/bp_conf/bashrc
+++ b/bp_conf/bashrc
@@ -2,20 +2,13 @@
 
 ### Stuff that enables biopieces.
 
-### Initially we need to configure the directories where biopieces are installed
-### and where the data (genomes and indexes) that the biopieces work on are installed.
-### Allso, it is possible to change the temporary directory from the system's tmp.
-
-export BP_DIR="/Users/m.hansen/biopieces"         # Directory where biopieces are installed
-export BP_DATA="/Users/m.hansen/bio_piece_data"   # Contains genomic data etc.
-export BP_TMP="/tmp"                              # Required temporary directory.
-
+### BP_DIR, BP_DATA, BP_TMP, and BP_LOG should all be set in ~/.bashrc
+### see http://code.google.com/p/biopieces/wiki/Installation
 
 ### The below bin directory should hold biopiece executables - regardsles of programming language.
 
 export BP_BIN="$BP_DIR/bp_bin"              # Directory with biopiece executables.
 
-
 ### The following directories hold the biopiece libraries, modules, gems, etc - one per programming language.
 
 export BP_PERL="$BP_DIR/code_perl"          # Direcotry with Perl code.
@@ -23,7 +16,6 @@ export BP_C="$BP_DIR/code_c"                # Direcotry with c code.
 export BP_PYTHON="$BP_DIR/code_python"      # Direcotry with Pyton code.
 export BP_RUBY="$BP_DIR/code_ruby"          # Direcotry with Ruby code.
 
-
 ### Here we add the biopiece variable to the existing PATH and PERL5LIB variables.
 
 export PATH="$PATH:$BP_BIN"