raise ArgumentError, "--identity or --e_val must be specified" unless options[:identity] or options[:e_val]
end
-
tmpdir = Biopieces.mktmpdir
infile = File.join(tmpdir, "in.fna")
outfile = File.join(tmpdir, "out.uc")
Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
- Fasta.open(infile, mode="w") do |fasta_io|
+ Fasta.open(infile, "w") do |fasta_io|
input.each_record do |record|
output.puts record