refactoring of assemble_pairs

[biopieces.git] / bp_bin / usearch_seq

diff --git a/bp_bin/usearch_seq b/bp_bin/usearch_seq
index d139957f1929fdd40ff46b038d924580260df0c8..38f65565e1e6251f328594ce3d3a44a50bc7ca80 100755 (executable)
--- a/bp_bin/usearch_seq
+++ b/bp_bin/usearch_seq
@@ -49,13 +49,12 @@ else
   raise ArgumentError, "--identity or --e_val must be specified" unless options[:identity] or options[:e_val]
 end
 
-
 tmpdir  = Biopieces.mktmpdir
 infile  = File.join(tmpdir, "in.fna")
 outfile = File.join(tmpdir, "out.uc")
 
 Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
-  Fasta.open(infile, mode="w") do |fasta_io|
+  Fasta.open(infile, "w") do |fasta_io|
     input.each_record do |record|
       output.puts record