# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-require 'biopieces'
+require 'maasha/biopieces'
ILLUMINA_BASE = 64
end
end
-casts = []
+options = Biopieces.options_parse(ARGV)
-bp = Biopieces.new
-
-options = bp.parse(ARGV, casts)
-
-bp.each_record do |record|
- bp.puts record.scores2dec!
+Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
+ input.each_record do |record|
+ output.puts record.scores2dec!
+ end
end