-#!/usr/bin/env perl -w
+#!/usr/bin/env perl
# Copyright (C) 2007-2009 Martin A. Hansen.
# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+use warnings;
use strict;
use Maasha::Biopieces;
use Maasha::Common;
{
if ( $options->{ "remove" } eq "after" )
{
- $record->{ "SEQ" } = substr $record->{ "SEQ" }, 0, $pos;
+ $record->{ "SEQ" } = substr $record->{ "SEQ" }, 0, $pos;
+ $record->{ "SCORES" } = substr $record->{ "SCORES" }, 0, $pos if $record->{ "SCORES" };
$record->{ "SEQ_LEN" } = $pos;
}
else
{
- $record->{ "SEQ" } = substr $record->{ "SEQ" }, $pos + $adaptor_len;
+ $record->{ "SEQ" } = substr $record->{ "SEQ" }, $pos + $adaptor_len;
+ $record->{ "SCORES" } = substr $record->{ "SCORES" }, $pos + $adaptor_len if $record->{ "SCORES" };
$record->{ "SEQ_LEN" } = length $record->{ "SEQ" };
}
}