seq_type = nil
Biopieces.open(options[:stream_in], tmp_file) do |input, output|
- Fasta.open(in_file, mode="w") do |fasta_io|
+ Fasta.open(in_file, "w") do |fasta_io|
input.each_record do |record|
if record[:SEQ_NAME]
seq_name_hash[seq_name_count] = record[:SEQ_NAME]