use warnings;
use strict;
use Maasha::Biopieces;
+use Maasha::Calc;
# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
$options = Maasha::Biopieces::parse_options(
[
- { long => 'no_stream', short => 'x', type => 'flag', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
- { long => 'data_out', short => 'o', type => 'file', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
- { long => 'keys', short => 'k', type => 'list', mandatory => 'yes', default => undef, allowed => undef, disallowed => undef },
+ { long => 'no_stream', short => 'x', type => 'flag', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
+ { long => 'data_out', short => 'o', type => 'file', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
+ { long => 'keys', short => 'k', type => 'list', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
+ { long => 'list', short => 'l', type => 'string', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
]
);
+Maasha::Common::error( qq(both --keys and --list specified) ) if $options->{ "keys" } and $options->{ "list" };
+Maasha::Common::error( qq(no --keys or --list specified) ) if not $options->{ "keys" } and not $options->{ "list" };
+
$in = Maasha::Biopieces::read_stream( $options->{ "stream_in" } );
$out = Maasha::Biopieces::write_stream( $options->{ "stream_out" } );
}
}
+ if ( $options->{ 'list' } and $record->{ $options->{ 'list' } } ) {
+ $record->{ $options->{ 'list' } . "_MIN" } = sprintf( "%.2f", Maasha::Calc::list_min( [ split ";", $record->{ $options->{ 'list' } } ] ) );
+ }
+
Maasha::Biopieces::put_record( $record, $out ) if not $options->{ "no_stream" };
}