removed debug message

[biopieces.git] / bp_bin / mean_vals

diff --git a/bp_bin/mean_vals b/bp_bin/mean_vals
index 44ce791e58eade41bb2f9ed04e1f4a127bcda9a0..974c9b4de1a53b64cbe46538f9c820f4ceab97ef 100755 (executable)
--- a/bp_bin/mean_vals
+++ b/bp_bin/mean_vals
@@ -35,7 +35,7 @@ use Maasha::Calc;
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
-my ( $options, $in, $out, $record, $key, %sum_hash, %count_hash, $mean, $fh );
+my ( $options, $in, $out, $record, $new_record, $key, %sum_hash, %count_hash, $mean, $fh );
 
 $options = Maasha::Biopieces::parse_options(
     [
@@ -63,14 +63,16 @@ while ( $record = Maasha::Biopieces::get_record( $in ) )
         }
     }
 
-    if ( $options->{ 'list' } and $record->{ $options->{ 'list' } } )
-    {
+    if ( $options->{ 'list' } and $record->{ $options->{ 'list' } } ) {
         $record->{ $options->{ 'list' } . "_MEAN" } = sprintf( "%.2f", Maasha::Calc::mean( [ split ";", $record->{ $options->{ 'list' } } ] ) );
     }
 
     Maasha::Biopieces::put_record( $record, $out ) if not $options->{ "no_stream" };
 }
 
+Maasha::Biopieces::close_stream( $in );
+Maasha::Biopieces::close_stream( $out );
+
 $fh = Maasha::Biopieces::write_stream( $options->{ "data_out" } );
 
 foreach $key ( @{ $options->{ "keys" } } )
@@ -81,13 +83,17 @@ foreach $key ( @{ $options->{ "keys" } } )
         $mean = "N/A";
     }
 
-    Maasha::Biopieces::put_record( { $key . "_MEAN" => $mean } , $fh );
+    $new_record->{ $key . "_MEAN" } = $mean
 }
 
-close $fh;
+if ( $options->{ "keys" } and $new_record )
+{
+    $new_record->{ 'REC_TYPE' } = "MEAN";
 
-Maasha::Biopieces::close_stream( $in );
-Maasha::Biopieces::close_stream( $out );
+    Maasha::Biopieces::put_record( $new_record, $fh );
+}
+
+close $fh;
 
 
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<