adding bzip2 support in ruby

[biopieces.git] / bp_bin / match_seq

diff --git a/bp_bin/match_seq b/bp_bin/match_seq
index 0900097c8417e596cf6e1710cb43d78a21fbedfd..d5362fa1a8f12dbd38dcc224aa8a50901c111260 100755 (executable)
--- a/bp_bin/match_seq
+++ b/bp_bin/match_seq
@@ -1,4 +1,4 @@
-#!/usr/bin/env perl -w
+#!/usr/bin/env perl
 
 # Copyright (C) 2007-2009 Martin A. Hansen.
 
@@ -26,6 +26,7 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
+use warnings;
 use strict;
 use Maasha::Biopieces;
 use Maasha::Match;
@@ -63,9 +64,9 @@ if ( @entries == 1 )
 
     map { Maasha::Biopieces::put_record( $_, $out ) } @{ $results };
 }
-elsif ( @entries == 2 )
+else
 {
-    $results = Maasha::Match::match_mummer( [ $entries[ 0 ] ], [ $entries[ 1 ] ], $options, $tmp_dir );
+    $results = Maasha::Match::match_mummer( [ shift @entries ], \@entries, $options, $tmp_dir );
 
     map { Maasha::Biopieces::put_record( $_, $out ) } @{ $results };
 }