adding bzip2 support in ruby

[biopieces.git] / bp_bin / get_genome_align

diff --git a/bp_bin/get_genome_align b/bp_bin/get_genome_align
index b1e5c1d31a140637b515eb139c36dc6b4b19b173..566ea6e365072e40f388b27a6b9784e503547439 100755 (executable)
--- a/bp_bin/get_genome_align
+++ b/bp_bin/get_genome_align
@@ -1,4 +1,4 @@
-#!/usr/bin/env perl -w
+#!/usr/bin/env perl
 
 # Copyright (C) 2007-2009 Martin A. Hansen.
 
@@ -26,11 +26,11 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
+use warnings;
 use strict;
 use Maasha::Biopieces;
 use Maasha::Common;
 use Maasha::UCSC;
-use Maasha::Filesys;
 
 
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
@@ -117,8 +117,6 @@ while ( $record = Maasha::Biopieces::get_record( $in ) )
     $align_num++;
 }
 
-Maasha::Filesys::dir_remove( $tmp_dir );
-
 Maasha::Biopieces::close_stream( $in );
 Maasha::Biopieces::close_stream( $out );