-#!/usr/bin/env perl -w
+#!/usr/bin/env perl
# Copyright (C) 2007-2009 Martin A. Hansen.
# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+use warnings;
use strict;
use Maasha::Biopieces;
{
if ( $record->{ "SEQ" } )
{
- if ( not $type ) {
- $type = Maasha::Seq::seq_guess_type( $record->{ "SEQ" } );
- }
+ $type = Maasha::Seq::seq_guess_type( $record->{ "SEQ" } ) if not $type;
- if ( $type ne "protein" )
+ if ( $type ne "PROTEIN" )
{
( $struct, $index ) = Maasha::Seq::fold_struct_rnafold( $record->{ "SEQ" } );
$record->{ "SEC_STRUCT" } = $struct;