added max_diversity swith to findsim.rb

[biopieces.git] / bp_bin / findsim_seq

diff --git a/bp_bin/findsim_seq b/bp_bin/findsim_seq
index 5622cec8b0a6d0d129546843bbf3aecf8cd169cd..183bae54a49f1fe93c950123f6136028d57778b8 100755 (executable)
--- a/bp_bin/findsim_seq
+++ b/bp_bin/findsim_seq
@@ -39,7 +39,7 @@ casts << {:long=>'kmer',          :short=>'k', :type=>'uint',  :mandatory=>false
 casts << {:long=>'step',          :short=>'s', :type=>'uint',  :mandatory=>false, :default=>1,   :allowed=>nil,           :disallowed=>"0"}
 casts << {:long=>'min_score',     :short=>'m', :type=>'float', :mandatory=>false, :default=>0.5, :allowed=>nil,           :disallowed=>nil}
 casts << {:long=>'max_hits',      :short=>'h', :type=>'uint',  :mandatory=>false, :default=>7,   :allowed=>nil,           :disallowed=>"0"}
-casts << {:long=>'max_diversity', :short=>'h', :type=>'uint',  :mandatory=>false, :default=>5,   :allowed=>nil,           :disallowed=>nil}
+casts << {:long=>'max_diversity', :short=>'M', :type=>'uint',  :mandatory=>false, :default=>5,   :allowed=>nil,           :disallowed=>nil}
 casts << {:long=>'query_ids',     :short=>'Q', :type=>'flag',  :mandatory=>false, :default=>nil, :allowed=>nil,           :disallowed=>nil}
 casts << {:long=>'subject_ids',   :short=>'S', :type=>'flag',  :mandatory=>false, :default=>nil, :allowed=>nil,           :disallowed=>nil}
 casts << {:long=>'realign',       :short=>'r', :type=>'flag',  :mandatory=>false, :default=>nil, :allowed=>nil,           :disallowed=>nil}